Implications of 2D versus 3D surveys to measure the abundance and composition of benthic coral reef communities.

A paramount challenge in coral reef ecology is to estimate the abundance and composition of the communities residing in such complex ecosystems. Traditional 2D projected surface cover estimates neglect the 3D structure of reefs and reef organisms, overlook communities residing in cryptic reef habitats (e.g., overhangs, cavities), and thus may fail to represent biomass estimates needed to assess trophic ecology and reef function. Here, we surveyed the 3D surface cover, biovolume, and biomass (i.e., ash-free dry weight) of all major benthic taxa on 12 coral reef stations on the island of Curaçao (Southern Caribbean) using structure-from-motion photogrammetry, coral point counts, in situ measurements, and elemental analysis. We then compared our 3D benthic community estimates to corresponding estimates of traditional 2D projected surface cover to explore the differences in benthic community composition using different metrics. Overall, 2D cover was dominated (52 ± 2%, mean ± SE) by non-calcifying phototrophs (macroalgae, turf algae, benthic cyanobacterial mats), but their contribution to total reef biomass was minor (3.2 ± 0.6%). In contrast, coral cover (32 ± 2%) more closely resembled coral biomass (27 ± 6%). The relative contribution of erect organisms, such as gorgonians and massive sponges, to 2D cover was twofold and 11-fold lower, respectively, than their contribution to reef biomass. Cryptic surface area (3.3 ± 0.2 m2 m-2 planar reef) comprised half of the total reef substrate, rendering two thirds of coralline algae and almost all encrusting sponges (99.8%) undetected in traditional assessments. Yet, encrusting sponges dominated reef biomass (35 ± 18%). Based on our quantification of exposed and cryptic reef communities using different metrics, we suggest adjustments to current monitoring approaches and highlight ramifications for evaluating the ecological contributions of different taxa to overall reef function. To this end, our metric conversions can complement other benthic assessments to generate non-invasive estimates of the biovolume, biomass, and elemental composition (i.e., standing stocks of organic carbon and nitrogen) of Caribbean coral reef communities. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s00338-021-02118-6.

A photographic data set of reef and coral communities across Venezuela.

This dataset contains 2850 photographs of the seafloor in coral communities from Venezuela that were taken during 2017 and 2018. We used a hierarchical experimental design with four random factors representing four different spatial scales: (1) region (hundreds of kilometers), (2) localities (tens of kilometers), (2) reef sites (hundreds of meters) and (3) transects (a couple meters) across the Venezuelan coast. At each site, four 30-m transects were deployed parallel to the coastline, and 15 pictures were taken every other meter at each transect, containing an area of at least 80 × 90cm with enough resolution to identify benthic groups. This dataset covers spatial scales from a few meters to hundreds of kilometers; marine protected areas, and non-protected areas; coastal zones, continental and oceanic islands. These images have the potential to be further used for training researchers in benthic organisms identification, and training artificial intelligence classification algorithms. Also, they represent and updated baseline to perform spatial and temporal comparisons in Venezuela or further studies involving multiple spatial scales in the region.

Colony geometry and structural complexity of the endangered species Acropora cervicornis partly explains the structure of their associated fish assemblage.

In the past decade, significant efforts have been made to describe fish-habitat associations. However, most studies have oversimplified actual connections between fish assemblages and their habitats by using univariate correlations. The purpose of this study was to identify the features of habitat forming corals that facilitate and influences assemblages of associated species such as fishes. For this we developed three-dimensional models of colonies of Acropora cervicornis to estimate geometry (length and height), structural complexity (i.e., volume, density of branches, etc.) and biological features of the colonies (i.e., live coral tissue, algae). We then correlated these colony characteristics with the associated fish assemblage using multivariate analyses. We found that geometry and complexity were better predictors of the structure of fish community, compared to other variables such as percentage of live coral tissue or algae. Combined, the geometry of each colony explained 40% of the variability of the fish assemblage structure associated with this coral species; 61% of the abundance and 69% of fish richness, respectively. Our study shows that three-dimensional reconstructions of discrete colonies of Acropora cervicornis provides a useful description of the colonial structural complexity and may explain a great deal of the variance in the structure of the associated coral reef fish community. This demonstration of the strongly trait-dependent ecosystem role of this threatened species has important implications for restoration and conservation efforts.

METODOLOGÍA PARA DIMENSIONAMIENTO DE MECANISMO POLICÉNTRICO DE RODILLA UTILIZANDO ANÁLISIS DE MARCHA Y ALGORITMOS GENÉTICOS / METHODOLOGY TO GAUGE A FOUR-BAR LINKAGE PROSTHETIC KNEE MECHANISM BASED ON GAIT ANALYSIS AND GENETIC ALGORITHMS

El objetivo de esta investigación es desarrollar una metodología para dimensionar un mecanismo policéntrico de rodilla de 4 barras para máxima estabilidad. Basado en el hecho de que la estabilidad del mecanismo durante la respuesta a la carga depende de la posición del centro instantáneo de rotación (CIR) respecto la fuerza de reacción del piso (FRP) durante la fase de apoyo, se desarrolló una plataforma de cómputo que representa el movimiento real de la pierna, el vector FRP y el mecanismo con su CIR. Para obtener los datos de entrada a la plataforma, se realizó un análisis de marcha a una paciente con amputación transfemoral unilateral, obteniendo la FRP, el ángulo de flexo-extensión de rodilla y la cinemática de los miembros inferiores. Por otra parte, a través de los algoritmos genéticos (AGs), se obtienen las dimensiones y configuración de los eslabones del mecanismo requeridas para iterar con la plataforma en la cual, comparando la ubicación de la FRP respecto al CIR en el plano sagital, se determinan las dimensiones funcionales adecuadas. El mecanismo se dimensionó exitosamente utilizando la metodología desarrollada, garantizando estabilidad de la rodilla después del contacto inicial y flexión voluntaria antes del despegue de punta.

This research was aimed to develop a methodology for establishing the proper dimensions of a four-bar linkage prosthetic knee mechanism for maximum stability. Based on the fact that the stability of a four-bar knee during load-bearing is determined by the location of the instantaneous center of rotation (ICR) with respect to the ground reaction force (GRF) vector, a computational platform was developed to simulate the movement of the leg, the GRF vector and the position of the ICR of the mechanism. On one hand, a gait analysis was carried out on a subject with unilateral transfemoral amputation, from which the GRF, the knee flexion-extension angle and the kinematics of the lower limbs were determined. On the other hand, genetic algorithms (GAs) technique provided the dimensions and mechanism links configuration required to iterate with the platform on which, comparing the location of the GRF and the ICR in the sagittal plane, the functional dimensions of the mechanism were obtained. The polycentric knee mechanism was gauged successfully by ensuring knee stability during the initial contact and load response as well as the ability to initiate voluntary flexion toward late stance before the toe-off.